The simplified molecular-input line-entry system (SMILES) is a specification in the form of a line notation for describing the structure of chemical species using short ASCII strings.
The SMILES macro renders strings in SMILES format into two-dimensional drawings of the molecules.
How to use
In the Confluence editor, type /smiles and select SMILES 2D Molecular Structure.
The macro properties panel will appear.
Add your SMILES Text and width and height:
Save the Confluence page and the 2D Molecular Structure will be rendered.
Examples of SMILES notation and the macro output
Some examples of the SMILES 2D Molecular Structure macro:
Phenol
SMILES text:
C1=CC=C(C=C1)O
Macro output:
Reaction SMILES • Example 1
SMILES text:
C=CCBr.[Na+].[I-]>CC(=O)C>C=CCI.[Na+].[Br-] __{'textBelowArrow': '90%'}__
Macro output:
Reaction SMILES • Example 2
SMILES text:
CC(=O)O.OCC>[H+].[Cl-].OCC>CC(=O)OCC
Macro output:
Aspirin
SMILES text:
CC(=O)OC1=CC=CC=C1C(=O)O
Macro output:
Codeine
SMILES text:
CN1CCC23C4C1CC5=C2C(=C(C=C5)OC)OC3C(C=C4)O
Macro output:
Glucose
SMILES text:
OC[C@@H](O1)[C@@H](O)[C@H](O)[C@@H](O)[C@H](O)1
Macro output:
Beta-carotene
SMILES text:
CC1CCC/C(C)=C1/C=C/C(C)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/C=C/C2=C(C)/CCCC2(C)C
Macro output:
Melatonin
SMILES text:
CC(=O)NCCC1=CNc2c1cc(OC)cc2CC(=O)NCCc1c[nH]c2ccc(OC)cc12
Macro output:
