David Simpson Apps
Products • Chemistry Toolkit for Confluence • Documentation
Docs

3D Molecule Macro

How to use

In the Confluence editor, type /3d and select 3D Molecule (PDF, SDF or MOL).

Confluence editor showing /3d macro selection

The macro properties panel will appear.

3D Molecule macro properties panel with PDB ID and Attachment Filename options

Choose from either a PDB ID or an Attachment Filename. The attachment filename must be for an attachment on the same page.

Add your macro width and height, or leave for the default size.

Save the Confluence page and the 3D Molecule will be rendered.

Examples

2POR (Porin)

Macro parameters:

PDB ID: 2POR

Macro output:

3D rendered output of Porin (2POR) molecular structure

1YCR (MDM2 bound to the transactivation domain of P53)

Macro parameters:

PDB ID: 2POR

Macro output:

3D rendered output of MDM2 bound to P53 transactivation domain (1YCR) molecular structure

6WW2 (Structure of human Frizzled5 by fiducial-assisted cryo-EM)

Macro parameters:

PDB ID: 6WW2

Macro output:

3D rendered output of human Frizzled5 (6WW2) molecular structure